rs27308017 SNP Detail

Summary

• ID
  rs27308017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156979079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCTAGCC AAGATTGGTC ATCACCCTAG CGGCCCCTCC
  CTTTGCTACT TATTTATTTA TTGAAACAGG CTCACTGCGT AGCCTCACTG GGCTTTGAGT
  W
  CAGGAACTTC TTCAGGCTCC AAACTGCTGA AATTACACGT CTTATCCACC ACACTATTGC
  ATATTGTGAT GGTTTGTATA TCCTTGGACC AGAGAGTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss37547436	NES08892715	PERLEGEN	MM_PANEL2	f	SNP	A			T			T		A
ss45205960	mCV23694168	ABI	CRAMUS_MOUSE	f	SNP		A	A		A	T
ss148092965	ENSMUSSNP4367241	ENSEMBL	ENSEMBL_Sanger	f	SNP			A			T
ss320584436	CHEV_2_156962895	CHEVERUD	SCREENING_POP	f	SNP								T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs27308017					SNP	A	A	A	T	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547436	NES08892715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156979079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	1701 bp distal
Rr397438	regulatory region 397438	1812 bp downstream
Rr568443	regulatory region 568443	1404 bp distal
Rr568444	regulatory region 568444	783 bp proximal
Rr568445	regulatory region 568445	844 bp proximal
Tssr21225	transcription start site region 21225	1353 bp downstream
Tssr27162	transcription start site region 27162	1944 bp upstream