rs27308019 SNP Detail

Summary

• ID
  rs27308019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156978517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTCATATA CATAAAATAA ATAAATAAAT CTTAAAAAAA
  AAAAAAGCTG GGAGCTAAGA AACAACAGAG ACTGGGCTTC CTGCAAAAGA CCATGCTCTT
  R
  CTAAATCTGC CTTAGTCAGT ACTCTCTAAA GGAACAGAAA TGTTAGAGTA AATATTTATG
  TGTGTGTTTA AAAGGGATTT ATACAGGATT TAGTTCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss37547438	NES08892732	PERLEGEN	MM_PANEL2	f	SNP	A		G		G		A
ss148092955	ENSMUSSNP5950049	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320584434	CHEV_2_156962333	CHEVERUD	SCREENING_POP	f	SNP						G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs27308019					SNP	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547438	NES08892732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156978517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	1139 bp distal
Rr397438	regulatory region 397438	1250 bp downstream
Rr568443	regulatory region 568443	842 bp distal
Rr568444	regulatory region 568444	1345 bp proximal
Rr568445	regulatory region 568445	1406 bp proximal
Samhd1	SAM domain and HD domain, 1	1501 bp upstream
Tssr21225	transcription start site region 21225	791 bp downstream
Tssr27160	transcription start site region 27160	1487 bp upstream
Tssr27161	transcription start site region 27161	1463 bp upstream
Tssr27162	transcription start site region 27162	1382 bp upstream