rs27308020 SNP Detail

Summary

• ID
  rs27308020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156978496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTTGTGT CAAGGACAGT ATGGTCATAT ACATAAAATA
  AATAAATAAA TCTTAAAAAA AAAAAAAGCT GGGAGCTAAG AAACAACAGA GACTGGGCTT
  S
  CTGCAAAAGA CCATGCTCTT ACTAAATCTG CCTTAGTCAG TACTCTCTAA AGGAACAGAA
  ATGTTAGAGT AAATATTTAT GTGTGTGTTT AAAAGGGAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss37547439	NES08892731	PERLEGEN	MM_PANEL2	f	SNP	C	G		G		C
ss148092951	ENSMUSSNP2919845	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320584433	CHEV_2_156962312	CHEVERUD	SCREENING_POP	f	SNP					G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs27308020					SNP	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547439	NES08892731	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156978496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	1118 bp distal
Rr397438	regulatory region 397438	1229 bp downstream
Rr568443	regulatory region 568443	821 bp distal
Rr568444	regulatory region 568444	1366 bp proximal
Rr568445	regulatory region 568445	1427 bp proximal
Samhd1	SAM domain and HD domain, 1	1480 bp upstream
Tssr21225	transcription start site region 21225	770 bp downstream
Tssr27160	transcription start site region 27160	1466 bp upstream
Tssr27161	transcription start site region 27161	1442 bp upstream
Tssr27162	transcription start site region 27162	1361 bp upstream