TAGAATGACT ATCATTCTAA AATTTAGGGT TTTTTTCCCC CCATCAACAG AACATTTGAA GTGATAAGCT GTTTGTTAGT GCTTCCACCT TGTGGTCTAC K AGGATATTGC ACTGCTAGGA ACTCAAAATC CCAGCTCTGG CGTCAAGATC TGAACTGAAT TCTCAGATCT GTCACCTCTT TGCTCACCTC CTTGCTCCC K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37547467 | NES08893521 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | G | T | G | T | G | T | G | G | T | T | G | T | |||
ss148092311 | ENSMUSSNP691119 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | G | |||||||||||||||
ss320584277 | CHEV_2_156942885 | CHEVERUD | SCREENING_POP | f | SNP | G | T | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs27308047 | SNP | T | T | G | T | G | T | G | G | T | G | G | G | T | T | G | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37547467 | NES08893521 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr2:156959069 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr568436 | regulatory region 568436 | within coordinates | ||||||
Rr568437 | regulatory region 568437 | 1 bp distal | ||||||
Rr568438 | regulatory region 568438 | 379 bp proximal | ||||||
Rr568439 | regulatory region 568439 | 1882 bp proximal | ||||||
Samhd1 | SAM domain and HD domain, 1 | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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