rs27308049 SNP Detail

Summary

• ID
  rs27308049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTGACTG GTGTTATAGG TGGTCCCATA ATTTGTTCCT
  TGATAAAGGT AATGTCTTCT TCAGGGACGA GACCATAGTT CTTCATGACA AGTTTGAGTT
  Y
  ATTAGAATTG ACCAGATGCT CAAACATCTC AATGGAGCCC TGTTCGTGCT GGGGGAAGTC
  AGTAGAATAC GGCTTAGTAC AGGTTCTCAG CCACCGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547469	NES08893537	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T		C	T		T	C	C	T		C
ss148092272	ENSMUSSNP7191301	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320584268	CHEV_2_156942195	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308049					SNP	C	C	T	C	T	C	T	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547469	NES08893537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958379 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr568435	regulatory region 568435			1499 bp distal
Rr568436	regulatory region 568436			495 bp proximal
Rr568437	regulatory region 568437			668 bp proximal
Rr568438	regulatory region 568438			1069 bp proximal
Samhd1	SAM domain and HD domain, 1			Coding-NonSynonymous
				mRNA-UTR