rs27308054 SNP Detail

Summary

• ID
  rs27308054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACTATCGT TTGGGGTAAA TAATGTCTAA CGGACTCAAG
  ATTAGGGAAA AATACGTCAC TCGGTTATAT AAGAAGGCAA ATGCACGAAA CTTACATCTT
  R
  ACACTTAGCA CTGAATGTAT AGCTCTGAAA GAATCCAGAC GACATCAGAT AGGAAATACC
  AGCTGGCTTT GATTAACACA AATAAAAACT TACCAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547474	NES08893528	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G		G	A		A	G	G	A		G
ss148092259	ENSMUSSNP3678407	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320584263	CHEV_2_156941994	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308054					SNP	G	G	G	A	G	A	G	G	A	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547474	NES08893528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958178 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1298 bp distal
Rr568436	regulatory region 568436	696 bp proximal
Rr568437	regulatory region 568437	869 bp proximal
Rr568438	regulatory region 568438	1270 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1932 bp upstream