rs27308130 SNP Detail

Summary

• ID
  rs27308130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCTAGC TGTCTCGTGG
  ATCTACAGAG GCACCGTGGC TAGTGGGGGA GCTAGCACCT CCCGTGTGCA TTTATGACCC
  CATAGTGGCA GACACACCAA ATACTCTTCA CCCATGAGTG GACAAGACAG AACGTGGCTA
  CCCGGAGGAG AGAGGCAGCA CAAGGCTGCT CGCCCGGGAG AGCATCATCA CTAAGATGTC
  R
  CCTCCAGCTC CTGCCTCTGT CCCCACTGCC TGCATCTCTA GCATTTCTGT TGACCACTGT
  TGGCTCCAAT TGGACTCAAT TCCTGGTAAA GCTGTGCAAA GTGGGGGTGA GGGGGGCAGC
  AGGGAGAACC ACAGCGGCTC GGCACTGGTA GGAACAGCAA GCTACAAAGA GAACCTGAGA
  CTCACTGCGC AGTCTGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547550	NES08894371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308130					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547550	NES08894371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939895 () rs orientation: forward

Symbol	Name	Function Class
Rr568433	regulatory region 568433	1975 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tldc2	TBC/LysM associated domain containing 2	1493 bp downstream
Tssr27104	transcription start site region 27104	483 bp downstream
Tssr27105	transcription start site region 27105	528 bp downstream
Tssr27106	transcription start site region 27106	617 bp downstream
Tssr27107	transcription start site region 27107	761 bp downstream
Tssr27108	transcription start site region 27108	887 bp downstream
Tssr27109	transcription start site region 27109	959 bp downstream
Tssr27110	transcription start site region 27110	1013 bp downstream
Tssr27111	transcription start site region 27111	1164 bp downstream
Tssr27112	transcription start site region 27112	1194 bp downstream
Tssr27113	transcription start site region 27113	1211 bp downstream
Tssr27114	transcription start site region 27114	1285 bp downstream
Tssr27115	transcription start site region 27115	1401 bp downstream
Tssr27116	transcription start site region 27116	1498 bp downstream