rs27308132 SNP Detail

Summary

• ID
  rs27308132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTTAACC TTGAGTCTGG GCACACAAAG GGGAGGGGGA
  CCCCTAGCTG TCTCGTGGAT CTACAGAGGC ACCGTGGCTA GTGGGGGAGC TAGCACCTCC
  Y
  GTGTGCATTT ATGACCCCAT AGTGGCAGAC ACACCAAATA CTCTTCACCC ATGAGTGGAC
  AAGACAGAAC GTGGCTACCC GGAGGAGAGA GGCAGCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547552	NES08894369	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	C		C	C	T		C
ss320584160	CHEV_2_156923573	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308132					SNP	C	C	T	C	T	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547552	NES08894369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939757 () rs orientation: forward

Symbol	Name	Function Class
Samhd1	SAM domain and HD domain, 1	within coordinates
Tldc2	TBC/LysM associated domain containing 2	1355 bp downstream
Tssr27104	transcription start site region 27104	621 bp downstream
Tssr27105	transcription start site region 27105	666 bp downstream
Tssr27106	transcription start site region 27106	755 bp downstream
Tssr27107	transcription start site region 27107	899 bp downstream
Tssr27108	transcription start site region 27108	1025 bp downstream
Tssr27109	transcription start site region 27109	1097 bp downstream
Tssr27110	transcription start site region 27110	1151 bp downstream
Tssr27111	transcription start site region 27111	1302 bp downstream
Tssr27112	transcription start site region 27112	1332 bp downstream
Tssr27113	transcription start site region 27113	1349 bp downstream
Tssr27114	transcription start site region 27114	1423 bp downstream
Tssr27115	transcription start site region 27115	1539 bp downstream
Tssr27116	transcription start site region 27116	1636 bp downstream