rs27308133 SNP Detail

Summary

• ID
  rs27308133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCGTGC ATGGTCTGCC
  TTCTGCTGGA AAGGAGCCGG CTATAGCCTG CTTTTATTTT GGTGAGGAAA ACCAAGTACC
  TGGGACCTTG TCCGTACTAC TGTCCTGCAG ACCCCACACA ATGCTGTGAC ACCAAGAAGC
  ATCTATGTGG GCCCTACAGA ATATATTCCT TCGTACAGGA ATCCAAACCG GGCATGCAGG
  R
  TATGAGAGTC TGCGATTAAG GAGCTTGCCT CTAGTTTCAG GATAGAAACG CTCATGAAAG
  CTTTATGGCA GCTGTCCCCT ACCCAACTGA TGTCACCGTC ACTAAACCTG TGGTTCTATT
  TACAGCAAGC TGACAGTATT CAGTAACTCG AGAGACTAAG CTGTTAAAAT CTCCATTTTT
  AATGCAGTCT CGTAAACGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547553	NES08894368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308133					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547553	NES08894368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939292 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1695 bp distal
Samhd1	SAM domain and HD domain, 1	162 bp downstream
Tldc2	TBC/LysM associated domain containing 2	890 bp downstream
Tssr27104	transcription start site region 27104	1086 bp downstream
Tssr27105	transcription start site region 27105	1131 bp downstream
Tssr27106	transcription start site region 27106	1220 bp downstream
Tssr27107	transcription start site region 27107	1364 bp downstream
Tssr27108	transcription start site region 27108	1490 bp downstream
Tssr27109	transcription start site region 27109	1562 bp downstream
Tssr27110	transcription start site region 27110	1616 bp downstream
Tssr27111	transcription start site region 27111	1767 bp downstream
Tssr27112	transcription start site region 27112	1797 bp downstream
Tssr27113	transcription start site region 27113	1814 bp downstream
Tssr27114	transcription start site region 27114	1888 bp downstream