rs27308134 SNP Detail

Summary

• ID
  rs27308134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGAAAAC CAAGTACCTG GGACCTTGTC CGTACTACTG
  TCCTGCAGAC CCCACACAAT GCTGTGACAC CAAGAAGCAT CTATGTGGGC CCTACAGAAT
  R
  TATTCCTTCG TACAGGAATC CAAACCGGGC ATGCAGGGTA TGAGAGTCTG CGATTAAGGA
  GCTTGCCTCT AGTTTCAGGA TAGAAACGCT CATGAAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547554	NES08894367	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G		G	A	G		A
ss148091865	ENSMUSSNP1232656	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320584158	CHEV_2_156923070	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308134					SNP	A	A	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547554	NES08894367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939254 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1657 bp distal
Samhd1	SAM domain and HD domain, 1	200 bp downstream
Tldc2	TBC/LysM associated domain containing 2	852 bp downstream
Tssr27104	transcription start site region 27104	1124 bp downstream
Tssr27105	transcription start site region 27105	1169 bp downstream
Tssr27106	transcription start site region 27106	1258 bp downstream
Tssr27107	transcription start site region 27107	1402 bp downstream
Tssr27108	transcription start site region 27108	1528 bp downstream
Tssr27109	transcription start site region 27109	1600 bp downstream
Tssr27110	transcription start site region 27110	1654 bp downstream
Tssr27111	transcription start site region 27111	1805 bp downstream
Tssr27112	transcription start site region 27112	1835 bp downstream
Tssr27113	transcription start site region 27113	1852 bp downstream
Tssr27114	transcription start site region 27114	1926 bp downstream