rs27308135 SNP Detail

Summary

• ID
  rs27308135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTTCCCG TGCATGGTCT GCCTTCTGCT GGAAAGGAGC
  CGGCTATAGC CTGCTTTTAT TTTGGTGAGG AAAACCAAGT ACCTGGGACC TTGTCCGTAC
  Y
  ACTGTCCTGC AGACCCCACA CAATGCTGTG ACACCAAGAA GCATCTATGT GGGCCCTACA
  GAATATATTC CTTCGTACAG GAATCCAAAC CGGGCATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547555	NES08894366	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	C	T		C	T	T	C		T
ss148091860	ENSMUSSNP4676936	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss320584157	CHEV_2_156923005	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308135					SNP	T	T	T	C	T	C	T	C	C	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547555	NES08894366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939189 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1592 bp distal
Samhd1	SAM domain and HD domain, 1	265 bp downstream
Tldc2	TBC/LysM associated domain containing 2	787 bp downstream
Tssr27104	transcription start site region 27104	1189 bp downstream
Tssr27105	transcription start site region 27105	1234 bp downstream
Tssr27106	transcription start site region 27106	1323 bp downstream
Tssr27107	transcription start site region 27107	1467 bp downstream
Tssr27108	transcription start site region 27108	1593 bp downstream
Tssr27109	transcription start site region 27109	1665 bp downstream
Tssr27110	transcription start site region 27110	1719 bp downstream
Tssr27111	transcription start site region 27111	1870 bp downstream
Tssr27112	transcription start site region 27112	1900 bp downstream
Tssr27113	transcription start site region 27113	1917 bp downstream
Tssr27114	transcription start site region 27114	1991 bp downstream