rs27308136 SNP Detail

Summary

• ID
  rs27308136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACACACTCG CACTCGCACT TCTCTTTTGT GTTTGAGAGA TTACTTTTAC
  TTTAAGAGCC TGGGTTCCAC TTCTAAAACT AATAAAGAGA AGCATCATTC ACTCTCTGTT
  GTCTCTTCTG GAGCCCAAAT GGCACCGCTG AAGGCCAGCC ACGGGTCAGG CGCTCACACA
  Y
  CTGTCACTTG ATCTCACAGG ACAGACATAG AGCTACGCTT GGACATTATG TAGATCTGGA
  CGGAGGCTGA ACCTCTGTAG ACAGAACCCA GGGGGCTTGA GAGGAAAGAG CTTGTTTTCA
  GGCACGAGAG TCTTTGAGCT TACGCCCCCA TACCCTTCCC GTGCATGGTC TGCCTTCTGC
  TGGAAAGGAG CCGGCTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547556	NES08894365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308136					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547556	NES08894365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938937 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1340 bp distal
Rr568432	regulatory region 568432	1783 bp distal
Samhd1	SAM domain and HD domain, 1	517 bp downstream
Tldc2	TBC/LysM associated domain containing 2	535 bp downstream
Tssr27104	transcription start site region 27104	1441 bp downstream
Tssr27105	transcription start site region 27105	1486 bp downstream
Tssr27106	transcription start site region 27106	1575 bp downstream
Tssr27107	transcription start site region 27107	1719 bp downstream
Tssr27108	transcription start site region 27108	1845 bp downstream
Tssr27109	transcription start site region 27109	1917 bp downstream
Tssr27110	transcription start site region 27110	1971 bp downstream