rs27308138 SNP Detail

Summary

• ID
  rs27308138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAGCCTG GGTTCCACTT CTAAAACTAA TAAAGAGAAG
  CATCATTCAC TCTCTGTTGT CTCTTCTGGA GCCCAAATGG CACCGCTGAA GGCCAGCCAC
  R
  GGTCAGGCGC TCACACATCT GTCACTTGAT CTCACAGGAC AGACATAGAG CTACGCTTGG
  ACATTATGTA GATCTGGACG GAGGCTGAAC CTCTGTAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37547558	NES08894363	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A		G		A	G	G		G
ss148091831	ENSMUSSNP1356618	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss320584150	CHEV_2_156922735	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27308138					SNP	G	G	G	G	G	A	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547558	NES08894363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938919 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1322 bp distal
Rr568432	regulatory region 568432	1765 bp distal
Samhd1	SAM domain and HD domain, 1	535 bp downstream
Tldc2	TBC/LysM associated domain containing 2	517 bp downstream
Tssr27104	transcription start site region 27104	1459 bp downstream
Tssr27105	transcription start site region 27105	1504 bp downstream
Tssr27106	transcription start site region 27106	1593 bp downstream
Tssr27107	transcription start site region 27107	1737 bp downstream
Tssr27108	transcription start site region 27108	1863 bp downstream
Tssr27109	transcription start site region 27109	1935 bp downstream
Tssr27110	transcription start site region 27110	1989 bp downstream