rs27308139 SNP Detail

Summary

• ID
  rs27308139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGAAGC GGCCTAGGCC
  CCGTGTGCTG CCCTCCCTGT GCTAGGGTTT TTATGTTATC TGGCTTTTTA TGTTGGTGCT
  GGGGGCAGGT CCTCGTGCCC GAGTAACAGA CATTGTACCT ACAGAGCTGT CTCCAGAGCT
  CGTTCCCTCT CTCTTCAGTG GCCAGTTTGG GCTGTGGCTG GACGGAGACC TGTACCATGG
  Y
  GGAAGCTACC CCTGTGCGAC CTTCAACAAT GAAGTGCTGG CCCGCAGGGA GCAGTTCTGC
  ATCAAGGAGC TGGAGGCCTG GGTTCTGAGC TGACGCCTCC CGGGCCTCCT CACACAGGGC
  AGCCATTCTG CCCAACTCAG GATGGGGAAG AACCCTCATG TGGACTGTGG CTCTCAGCCA
  GCCTCCTTAT GGCTTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547559	NES08894400	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308139					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547559	NES08894400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938308 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	711 bp distal
Rr568432	regulatory region 568432	1154 bp distal
Samhd1	SAM domain and HD domain, 1	1146 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates