rs27308140 SNP Detail

Summary

• ID
  rs27308140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGCCCT GTACGCTAGA
  GAGCACATGA GGAGGCCCCA AATCCTGATG AGCTGGAAGG GATGAGAACA GCCATGATGG
  AGGGACAGTG GTCGTGTGGT GATGGCAGCC AGTCACAGAG GCCTAGCACA TGGCACAACC
  GTGCCGAGAT TCCCCGTGTG TGCGTGCATG CACACGCATA TGGAGAACTG AGGCTGACAC
  Y
  AGATGTCCTC CACAGTCCAT CTCCACCATA TCATTGAAGC GGCCTAGGCC CCGTGTGCTG
  CCCTCCCTGT GCTAGGGTTT TTATGTTATC TGGCTTTTTA TGTTGGTGCT GGGGGCAGGT
  CCTCGTGCCC GAGTAACAGA CATTGTACCT ACAGAGCTGT CTCCAGAGCT CGTTCCCTCT
  CTCTTCAGTG GCCAGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547560	NES08894414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308140					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547560	NES08894414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938077 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	480 bp distal
Rr568432	regulatory region 568432	923 bp distal
Samhd1	SAM domain and HD domain, 1	1377 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates