rs27308144 SNP Detail

Summary

• ID
  rs27308144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156937758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTTATAC CCTGAAGGTA AAAATAAAAG CATTCCTCTA
  TCAGCTCAGC TCCACTGAGG GGCAGCAGGA CACAGGGCAC ATCGGCCATC GCTGATTACC
  Y
  ATCCACTTCC TGCTTCCAGC CCAGGTTCTC TTTCAAATGT GATGAGAATG TTCTAAAACA
  GGGTTGAGGT GATAGCTGGA CCACTGTGTA AGTTATTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547564	NES08894487	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	C	T	C		T	C	C	T		C
ss148091790	ENSMUSSNP3240360	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320584138	CHEV_2_156921574	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308144					SNP	C	C	C	T	C	T	C	C	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547564	NES08894487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156937758 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	161 bp distal
Rr568432	regulatory region 568432	604 bp distal
Samhd1	SAM domain and HD domain, 1	1696 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates