rs27308145 SNP Detail

Summary

• ID
  rs27308145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156937747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGTGCA TCTGGCTAAG
  AACACAGTCT GTGAGTTTGG GGGCAGGCGT GGGAGTTAGG AAAAAACAAA GGTTGTTCTC
  ACCCTGGGGT GAGCCCTATG TGGAAGCACA TTAAGTTATA CCCTGAAGGT AAAAATAAAA
  GCATTCCTCT ATCAGCTCAG CTCCACTGAG GGGCAGCAGG ACACAGGGCA CATCGGCCAT
  Y
  GCTGATTACC CATCCACTTC CTGCTTCCAG CCCAGGTTCT CTTTCAAATG TGATGAGAAT
  GTTCTAAAAC AGGGTTGAGG TGATAGCTGG ACCACTGTGT AAGTTATTAA AACCAATGGC
  TTGTTTAAAA AAATGCCCTG TACGCTAGAG AGCACATGAG GAGGCCCCAA ATCCTGATGA
  GCTGGAAGGG ATGAGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547565	NES08894486	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308145					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547565	NES08894486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156937747 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	150 bp distal
Rr568432	regulatory region 568432	593 bp distal
Samhd1	SAM domain and HD domain, 1	1707 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates