rs27308148 SNP Detail

Summary

• ID
  rs27308148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156937520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCACACTC AACCAGCCCA TCCCCATCAC ACGCTTAGTG
  ACATCTTAGT GTGACGTGAC TGGGAACGAG GAGTCACAAG ATGGGGAAGT CCCAGAGTTC
  S
  GAGTCCCATG GGACAAGGCT TGATAGAAGA TGTGCATCTG GCTAAGAACA CAGTCTGTGA
  GTTTGGGGGC AGGCGTGGGA GTTAGGAAAA AACAAAGGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547568	NES08894483	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	C		C		C		C	C	G		C
ss45234816	mCV23562624	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		G
ss148091781	ENSMUSSNP3005254	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						G
ss320584135	CHEV_2_156921336	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308148					SNP	C	C	C	C	G	C	C	C	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547568	NES08894483	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156937520 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	within coordinates
Rr568432	regulatory region 568432	366 bp distal
Samhd1	SAM domain and HD domain, 1	1934 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates