rs27308413 SNP Detail

Summary

• ID
  rs27308413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156020203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACGGTTT AAGCGCAATG TTTTTATTCC ACAGTTTGAA
  CACATCACCA ATAGTAGGAT CTCTAAGTTA CCAGGCTTAA GGTCTGAGAC ACCAGTGACA
  R
  TGCATGCATG CACACTGCTA TTTTCACCAC CAACTGGTCA AAGAATGAAG AGTGCTGACT
  TTTACTGTGA TACCGAAATG GGTCATATTG TATTACTGGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550542	NES08896921	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308413					SNP	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550542	NES08896921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156020203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12544	CpG island 12544	1037 bp proximal
Gm75045	predicted gene, 75045	1315 bp upstream
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	1098 bp upstream
Rr367342	regulatory region 367342	1855 bp upstream
Tssr21144	transcription start site region 21144	1302 bp upstream
Tssr27040	transcription start site region 27040	1697 bp upstream
Tssr27041	transcription start site region 27041	1465 bp upstream
Tssr27042	transcription start site region 27042	503 bp upstream
Tssr27043	transcription start site region 27043	1689 bp downstream
Tssr27044	transcription start site region 27044	1852 bp downstream