rs27308414 SNP Detail

Summary

• ID
  rs27308414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156019038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CAAAGTCCAC GGCTTTATAT
  Y
  CTGAAGGACT TTCTCATCTC AAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37550543	NES08896920	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C		C	T	T		T	C	C	C		C
ss45281255	mCV23683867	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss148067877	ENSMUSSNP4379548	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320578041	CHEV_2_156002854	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308414					SNP	C	C	T	T	C	T	C	T	C	T	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550543	NES08896920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156019038 () rs orientation: forward

Symbol	Name	Function Class
Rbm39	RNA binding motif protein 39	within coordinates
Tssr27040	transcription start site region 27040	532 bp upstream
Tssr27041	transcription start site region 27041	300 bp upstream
Tssr27042	transcription start site region 27042	645 bp downstream