rs27308415 SNP Detail

Summary

• ID
  rs27308415
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156018109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATAAAA CCATGGAACT
  GAAACTTTAG GAAACTCAAT TCAGAAAAGA TTAAAAATGC ATGCTATGTA CCCTGTAAAC
  TATTCCCAAT ATCCACTTTG GTGGATTTGA TTAGTGAGAA ATTTTTAGTG ATTCCCACCC
  TAAGCTTATA CAATGAAAAA AGTTTCCATA AATTAGACCT TTCTTTTCTC TTACTAACAG
  W
  TTTTGATACA GGATCTAAGA AATCCAGCTG TAATTTATGA TCATTTTGCC TCTTCTTAAG
  TGAGAAAACT TTAAGCCTGA ACCACAACAC CCAAAGCACA TTTTAAAATT AACCCCTTAC
  CACATTTAGA TTACAAAATC TTTGCTTGGC AAATTCTAAG CAATCCACAT CAAACAATTT
  TCTCATCTAT TTTATGAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550544	NES08896974	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308415					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550544	NES08896974	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156018109 () rs orientation: forward

Symbol	Name	Function Class
Rbm39	RNA binding motif protein 39	within coordinates
Tssr27039	transcription start site region 27039	1653 bp upstream
Tssr27040	transcription start site region 27040	382 bp downstream
Tssr27041	transcription start site region 27041	597 bp downstream
Tssr27042	transcription start site region 27042	1574 bp downstream