rs27308416 SNP Detail

Summary

• ID
  rs27308416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156017740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC TCTAGTGATT AAGACAGGAT
  R
  CAGAGTACAA TCTGAACATA GTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37550545	NES08896973	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G		G	A	G		A	G	G	A		G
ss45300493	mCV23683866	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss148067872	ENSMUSSNP6042582	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320578039	CHEV_2_156001556	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308416					SNP	G	G	A	A	G	A	G	A	G	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550545	NES08896973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156017740 () rs orientation: forward

Symbol	Name	Function Class
Rbm39	RNA binding motif protein 39	within coordinates
Rr568193	regulatory region 568193	1935 bp proximal
Tssr27039	transcription start site region 27039	1284 bp upstream
Tssr27040	transcription start site region 27040	751 bp downstream
Tssr27041	transcription start site region 27041	966 bp downstream
Tssr27042	transcription start site region 27042	1943 bp downstream