rs27308725 SNP Detail

Summary

• ID
  rs27308725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155467837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGATCCC ACTTGGCGGC ACCCCTACCC TTAGGTGTTC
  TTCAAGGCTG GGCTTCTAGG CATCCTGGAG GAGCTGCGGG ACCAGCGTCT GGCTAAGGTG
  K
  TGACACTGCT GCAGGCTCGG AGCCGGGGCC GCCTCATGCG GCTGGAGTAC CAGCGCATGC
  TAGGGGGAAG GTAACTGCGG GTGAGGGATG GAGGATAAGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37552545	NES08898339	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27308725					SNP	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552545	NES08898339	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155467837 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myh7b	myosin, heavy chain 7B, cardiac muscle, beta			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr568084	regulatory region 568084			771 bp distal
Rr568085	regulatory region 568085			1032 bp distal
Rr568086	regulatory region 568086			1290 bp proximal