rs27308728 SNP Detail

Summary

• ID
  rs27308728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155466055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTTTTC GGGTTGGATT
  TATTATTCTA GAACTCAGGT GAGCATACGA GAGAGGGTAT AGATTGAGGA TTAAACATGG
  GTTTGTGTGG ACCTTGAGAG ATGCCTGACA GATAGTGGGT GTGCCAGCAA TGTCATCGGC
  TCCTTTCCCA CTTCCCTTGG TCGGTTCTGT TTGTTAAACT ACACGTGTCC TTAGTTGTTT
  Y
  CCCTTCTACA AGTAAAGGAG CTATCACCTG CCCTTTATAG TTTAGCTATC TATACAGATG
  CTGTACATGT GCGCACGTGT ACACAGAGAG CTTGTAGGTT TGTTTTTATG TCACTATCAG
  TCCCATCTCC AACCAAGGGC CTGAGTCTGC GTTATCTTTG TCTGTTGTTT TAAAGCAGGG
  TATTGCTGTG TGGCCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37552548	NES08898392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27308728					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552548	NES08898392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155466055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir499	microRNA 499			1177 bp downstream
Myh7b	myosin, heavy chain 7B, cardiac muscle, beta			Intron
				Noncoding-Transcript-Variant
Rr568083	regulatory region 568083			1309 bp distal
Rr568084	regulatory region 568084			466 bp proximal
Rr568085	regulatory region 568085			729 bp proximal