rs27309203 SNP Detail

Summary

• ID
  rs27309203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156717475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCACTGC CAATAAGGTT TTCCCCTTTG TCTCCTTGAC
  ATCAGAAATG CTAGCTAAGG ATTGCATTGC ACCCAGGAAG AGCACAGTCT GGTTCCTGTG
  R
  GAAGAACTCA GCTTCTGTGC ACATTAATTT AGAATCACCG TTGCCTGTGA GATTCTGGCC
  AGGCTCATGG TTGGCCTGTA GTTCTTTGTC ATCATGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37548422	NES08901640	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G		G		A	G	G		G
ss148084976	ENSMUSSNP3920176	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320582517	CHEV_2_156701291	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27309203					SNP	G	G	G	A	G	A	G	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548422	NES08901640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156717475 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	1992 bp downstream
Rr568378	regulatory region 568378	1248 bp distal
Rr568379	regulatory region 568379	1711 bp distal
Sla2	Src-like-adaptor 2	Intron