rs27309204 SNP Detail

Summary

• ID
  rs27309204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156717450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCTCA AGACAGGTTT
  TCTCTCTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGGC CAGACTAGCC TGGAACTCAG
  ATCTGCCTGC CTCCACCCGC TGTGTGCTGG GATTAAAGGT GTGCACCACC ACTGCCAATA
  AGGTTTTCCC CTTTGTCTCC TTGACATCAG AAATGCTAGC TAAGGATTGC ATTGCACCCA
  R
  GAAGAGCACA GTCTGGTTCC TGTGGGAAGA ACTCAGCTTC TGTGCACATT AATTTAGAAT
  CACCGTTGCC TGTGAGATTC TGGCCAGGCT CATGGTTGGC CTGTAGTTCT TTGTCATCAT
  GGGATGGAGG CAGCTCCCAC TCACATCTTA GCACAAGGGC TGCATAAGGA TCGATAGCAG
  AAGTGCCTCC TCTGTATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37548423	NES08901639	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27309204					SNP	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548423	NES08901639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156717450 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	1967 bp downstream
Rr568378	regulatory region 568378	1223 bp distal
Rr568379	regulatory region 568379	1686 bp distal
Sla2	Src-like-adaptor 2	Intron