rs27309208 SNP Detail

Summary

• ID
  rs27309208
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAACACTG AAGTTGGCTG AAAGGACTTG ATGGGAGATC
  ATGGGAAGAT CTGGATTGTC AGTCTTCCTC GTGCGTGGGA GTTAGGTGGG GTCTACTGCG
  K
  TAAAGCCATC CAGTGTTCCT CTTGTCAATG CTTTCTGAGC CATCCTACCA TCTGAGATGT
  GTTTGCATTC TGGAAAAGAC TTGTGAGCGT TCCCAATAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37548427	NES08901635	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G		T	G	G		G
ss320582511	CHEV_2_156699705	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27309208					SNP	G	G	T	G	T	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548427	NES08901635	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715889 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	406 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	125 bp distal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1455 bp downstream