rs27309209 SNP Detail

Summary

• ID
  rs27309209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTTG GCTGGAGTTG
  GTATTGGCAT TTCAGAGAGG GTCCACCACC TGATGTCCTG ACTCAGTACT GAGATAGGTG
  ACTGGGCTAG ATGTGAGATT TAAACGGTGT CATTTTGTGT TTGACCACCA GGTGGCAAAA
  CGGGGGTATG GGGAGGACCT GGCTGTTTGA ACACTGAAGT TGGCTGAAAG GACTTGATGG
  R
  AGATCATGGG AAGATCTGGA TTGTCAGTCT TCCTCGTGCG TGGGAGTTAG GTGGGGTCTA
  CTGCGGTAAA GCCATCCAGT GTTCCTCTTG TCAATGCTTT CTGAGCCATC CTACCATCTG
  AGATGTGTTT GCATTCTGGA AAAGACTTGT GAGCGTTCCC AATATTTTTT CTCTCCATGG
  TAGTGATGCT CTCTCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37548428	NES08901634	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G
ss148084931	ENSMUSSNP3956280	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27309209					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548428	NES08901634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715823 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	340 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	59 bp distal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1389 bp downstream