rs27309210 SNP Detail

Summary

• ID
  rs27309210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTTTCA GAAACTTGAA
  TAAACAAATC TTTAACTGAA AGTGTGTTGG CATGCCTGGT AAACTAAAGC CTTGCTTACC
  TACTGACCTT ACCCTCTGAA CCTAGGAGTA GGGTTTAGCA GAGCCCCTGC TCTCTTCCCT
  CCTCCCTCTC CTCCCACAGC AGCAGTAGCA GCCAGACTCT TTCTCTTTTG GCTGGAGTTG
  R
  TATTGGCATT TCAGAGAGGG TCCACCACCT GATGTCCTGA CTCAGTACTG AGATAGGTGA
  CTGGGCTAGA TGTGAGATTT AAACGGTGTC ATTTTGTGTT TGACCACCAG GTGGCAAAAC
  GGGGGTATGG GGAGGACCTG GCTGTTTGAA CACTGAAGTT GGCTGAAAGG ACTTGATGGG
  AGATCATGGG AAGATCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37548429	NES08901633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27309210					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548429	NES08901633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715643 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	160 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	100 bp proximal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1209 bp downstream