rs27309211 SNP Detail

Summary

• ID
  rs27309211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGTCCATG GTACAATACA AGCAGCCATC TAATAAGTCT
  CCATTGTAGG ATGTTTTCAG AAACTTGAAT AAACAAATCT TTAACTGAAA GTGTGTTGGC
  W
  TGCCTGGTAA ACTAAAGCCT TGCTTACCTA CTGACCTTAC CCTCTGAACC TAGGAGTAGG
  GTTTAGCAGA GCCCCTGCTC TCTTCCCTCC TCCCTCTCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37548430	NES08901632	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A		T		A
ss320582507	CHEV_2_156699310	CHEVERUD	SCREENING_POP	f	SNP					T		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27309211					SNP	A	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548430	NES08901632	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715494 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	11 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	249 bp proximal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1060 bp downstream