rs27309820 SNP Detail

Summary

• ID
  rs27309820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169117928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACACACAT TACATGCACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACC TGCATACCCA TGTACCCCAA TACACACATG
  M
  ACATGCATAT ATCCATGCAG CCTTTAAGGA AAGGATGCTG ACTCATGGAT TAGAGACCTG
  CTATGCCTCA GTGATTTTGG GTGACCTGGG CACTGGGCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37501741	NES08839587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27309820					SNP	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37501741	NES08839587	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169117928 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr117	DNA Segment, Chr 2, Derry C. Roopenian 117	within coordinates
D2Mit343	DNA segment, Chr 2, Massachusetts Institute of Technology 343	4 bp distal