rs27309828 SNP Detail

Summary

• ID
  rs27309828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169116727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA CAGCAGCAGC AGAGGGTAAA
  M
  GCCCCTTAGT CACGTTGCCG TGATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37501749	NES08839729	PERLEGEN	MM_PANEL2	f	SNP			C	C		A		A	A
ss148281363	ENSMUSSNP5565969	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320612056	CHEV_2_169100307	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27309828					SNP	C	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37501749	NES08839729	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169116727 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr117	DNA Segment, Chr 2, Derry C. Roopenian 117	1070 bp proximal
D2Mit343	DNA segment, Chr 2, Massachusetts Institute of Technology 343	1050 bp proximal
Rr60000	regulatory region 60000	1128 bp distal