rs27312013 SNP Detail

Summary

• ID
  rs27312013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171958669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTCCGT TGAACGGCAC
  TGGGTGTCTA GATGCCAACA AAACCTGATG GGTCCACAGG AATGGTGATC GAGTTTAACT
  ATAATCATGT GTGGAGCACC GGGTGTCACC GAGGAAGACA CAGCTCCGTG CAATTGCTGG
  GGACCCAACT CCACAGTCAC ACGGTAGGGA TCGTTAGTGA AAGATGCACA GAAACAATGT
  S
  GCGAATCCTA GAGCTGGCCA AACGGGTGAG GGCTAATCAA TGGAAAGTGG AATGGTGGGG
  GTGAGCTGAG GTCCGTGCTG CCAGGGGTTA ACATCCCTGT TGTCTCTCTA ACATCGCTGT
  TGTCTCTCTA ACAAGTTTCA CATCCAGGAA GAAGGCTGGA AAGACCACCC CAACCTTGGA
  AAGCTACTGA TTTCCACCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37499846	NES08924899	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	C	C	C	G	C
ss37810057	NES08701841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27312013					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37499846	NES08924899	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37810057	NES08701841	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171958669 () rs orientation: forward

Symbol	Name	Function Class
Gm40006	predicted gene, 40006	within coordinates
Rr571605	regulatory region 571605	527 bp distal