rs27313332 SNP Detail

Summary

• ID
  rs27313332
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166526403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGCAG CAAATAGGTG
  TGTCCCTGTG GCAAGCGATC ACTGCCCTAT CTATAGTATT TCCTGTATTT CTCAAGAACC
  CCAGTTAGGG TCACAGGCAT GGAGCTACCT CATATCACAC AGCAATGACA AAGCAGAGAG
  AGGTGAGGTC CTCTGCCCTG TATGCCTGAG CCCTGTACTC CTGCAGACCA CAGGAGACAC
  K
  CTGAGCTGCA GTTGTCCTGC CCAGGTGTCT GCACATAGTG TCACCTGCTC CAAACGGAAG
  CTTTTTATTC TAAGGACCAC TCCTTTCCCA CATGTACCCA AATACAGAGG GGGCTCTGGC
  ACCCCATGCA CCCTTGGGTG GAGCTACAGA GAGGTGGAGA GGGGTGGGGG AGGTGGGGCT
  TGTCTAATCC TCTGGGGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37509955	NES08855633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27313332					SNP	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37509955	NES08855633	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166526403 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570343	regulatory region 570343			1206 bp distal
Rr570344	regulatory region 570344			143 bp distal
Rr570345	regulatory region 570345			1334 bp proximal