rs27314339 SNP Detail

Summary

• ID
  rs27314339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCAGAG TCACCTAATC
  TATCCTGAGC ACAGCTAGAG AAGCCAAAAG AAGCTGGCGT GTGTAAACTT GGAATAGATC
  TTTCACCTCT GGGGTCCAGC TGAGGCCCAT TTCTAGTTTC CCACTAGGGA CTCATAAGGG
  GCCCAGAGAC TGACTGGTTT GGCTAAGGGA CCCAAAGCCT GACTTGGAGA CACCTGAAGT
  Y
  CCAGTATCTG AGCAGCAGCA GTAGTAATCT GAAGCCAGCT GAGCCCCCAT AAGGGAGGCA
  CTGGGACTGG GGAATGGCAT AGTCATTAAA GCACCATGCT AGCAGAAGGG CTTGAGTTCA
  GATCCCCAGT AGCTAAGTAA AATGCTAGGC GTGGCAGCAG GTGCCTATAA TGCGTCGCCT
  AAGAGGCAGA GGCAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513759	NES08883012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27314339					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513759	NES08883012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	417 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	845 bp upstream
Rr569954	regulatory region 569954	233 bp distal
Rr569955	regulatory region 569955	355 bp proximal
Rr569956	regulatory region 569956	856 bp proximal
Rr569957	regulatory region 569957	1027 bp proximal
Rr569958	regulatory region 569958	1204 bp proximal
Tssr21727	transcription start site region 21727	822 bp upstream
Tssr21728	transcription start site region 21728	1984 bp upstream