rs27315024 SNP Detail

Summary

• ID
  rs27315024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166120531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAAGG TCTCATGTAG
  CCCAGGCTCA CCTCAAATTT CTTTGTAGAG GAGGATGACT CGATCTCTGA TCCTCCTGCC
  TGCCCCTCCC GAGTGCTGTG CCATCTGACC AGGTTGGATG CGATGCTGAG GATTGAACAC
  TGAGCTCTGT GCATATTAGG CAGGTACTCT CCTGACTGAG CGACATCCCC AGCCCTCAGT
  Y
  CTCTTGAGAA GTCAACAGCT GAAATAATTC TGCCCTCATC TAGGTTGGAG ATAAGGTCAG
  TCTGCCGACC CCAGATCTCC GTGTGTTGCT GCCTCATTGA AACCTAAGAA GGTCCCCATG
  TCTAGTCCAA CCTGATGGAA TAGCTTCTGG CAAACACGCA GAGCCAGGGA GAGTTAGAAA
  GAACAGACGT ATACAAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37511844	NES08849497	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27315024					SNP	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511844	NES08849497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166120531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24			1671 bp distal
Gm11468	predicted gene 11468			within coordinates
Gm30733	predicted gene, 30733			mRNA-UTR
				Noncoding-Transcript-Variant
Rr570200	regulatory region 570200			1847 bp proximal