rs27315025 SNP Detail

Summary

• ID
  rs27315025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166120107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCCTAC AAAGGGCCTC
  CTGCTAAGGG GAATAAAGAC AGGATTTGGA CTTGGGACTC CTGAGAGCCT CTGATGTAAA
  CCTTGGCTCC CAGCTCTCAT TTAAAAAGAA TCTGTCCACG TATGCTTTTC ACATCAAACA
  AGCTATTAAA GTGATTATTG CCTTCTTGAG ATGCTCTCCC AACTTGCCAC AGGCCCCAAG
  Y
  AGCCCAGCCT TCTCCCAAGG GAGACCAGGG TCAACCTCCT GGTCTACTCG GCTCCCCAGT
  CCCCAGAGGT TTCCCATCAC TGCAGCTGAT TGTCACCCAT CTCTCTGATA TTTAAAAAAA
  AAAAAAGCCT GCCTTTTGGT ATTTTGCTTT CGCTCCCCAA CCAGAGACTT CCCCAATCTC
  TGTCCATGAC TGCAGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37511845	NES08849560	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27315025					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511845	NES08849560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166120107 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	1247 bp distal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	within coordinates