rs27315029 SNP Detail

Summary

• ID
  rs27315029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166119842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGAGCA GACTCTACCT
  GCTTCTGTCC CTCACAAGTA GTAGTACAAG GCAGGTTGAC CAGATGGACA TTCAGACATG
  GTGGCTGTGG GCTGAATCAG GTTAAAGGAG GGCCCTGTGC TGTAAACTGG TTTATGTTTA
  ACAACTGATT TTCCAGGCAG GTGACAGCAG GGTCTATGTG TCTTATATAT ACATACCTGT
  Y
  AGATTTCCCA CATATCCCAT GAGACAGGTG ACCTCATCAT TGCGTCCACT TTAGAGATGT
  GCTTGATAGC CTACAAAGGG CCTCCTGCTA AGGGGAATAA AGACAGGATT TGGACTTGGG
  ACTCCTGAGA GCCTCTGATG TAAACCTTGG CTCCCAGCTC TCATTTAAAA AGAATCTGTC
  CACGTATGCT TTTCACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511849	NES08849556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511849	NES08849556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166119842 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	982 bp distal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	within coordinates