rs27315032 SNP Detail

Summary

• ID
  rs27315032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166119546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCATGGC CTTGTTAGTC
  TGTGGCTTTG AGGACCCGAT GGTTTGGGTT CGGTTACCCA GCGAGTGGAG GATGGGTGTT
  ATTAAACATT TAGATGATCG GGACCGCCCT CTCCTGTCAC AGGCAGAGCA TGGGGGCTCA
  GCTAATGACC GCAAGGGAGG CAGGGCTGGG AGCCAACTAT AGTGTTCTCT GAAGTCAGAG
  R
  GAACTTGCAT CTTCTGCCTG CAGCAGAGAG GAGCTGCTTA GCTACAGGGC ACTCAAAAGA
  AGTCCAGTTG TCCACCCACT TTCCATTGAC AAGTGTGTTT GAGCAGACTC TACCTGCTTC
  TGTCCCTCAC AAGTAGTAGT ACAAGGCAGG TTGACCAGAT GGACATTCAG ACATGGTGGC
  TGTGGGCTGA ATCAGGTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511852	NES08849553	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315032					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511852	NES08849553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166119546 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	686 bp distal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	108 bp downstream