rs27315034 SNP Detail

Summary

• ID
  rs27315034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166118960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTGTCA CTATGATTCT
  CCCCTCAAAC TCCGTGTGTG GTGTGTATGT GTGTGTTTGT GTGTGTGTGT GCAGATGAAT
  GCAGGTGGAA AGGGACTGGT AGTGCCAGTT ATACTTCTTA AAAGATCATC TAGGGACTCT
  TCCTGGATAG TATTCTTTGT CCTGGATTGA GACAAGATCT GAGGGCTTGT GGGTTCTGGA
  R
  AAGATAGCTT AAAGAAAAGG GTCAGCCAGA GCAAGGCCTG GCAGGTCGTT TTCTGCTAAG
  GAGCAAGAGG AGAGAGATGG ATAAGGGGAC AGAGGTGACT GAGATTGGAT AGAGATGGGA
  CCAGAGTGTC AACTGAGCAA AGTAGAGTTG CCAAGACCCC TCAGAGGGAA TGGGGTGGGG
  TCTTGCCAAC TCCCCCACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511854	NES08849551	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315034					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511854	NES08849551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166118960 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	100 bp distal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	694 bp downstream