rs27315036 SNP Detail

Summary

• ID
  rs27315036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166118287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCCT TTCTCCCCGG
  GGGTCTCAGA AGCTTCACCT TAAATGGTCT TTAAAGCTCC TCTTTTCTAG CTTTAATTCC
  CATGACCCCC ATTGTCCAGT ACAAAGTCGA AGGAGCTGGA GATGGTCAAG GTCACCAGCT
  ATGCTTGGAA GATGGTTTTT AAAAAACCGT CTTGACCTTG GAAGGATCCA GAACCTGCAA
  Y
  ACGGCCTGTT GTGCAGTCCC TTGGCGTTTG GGAGTTTCTT TAAGGAAAGG TGACTTAGAG
  TCTGGAGTTG CTTGTGTCTC TCTTTCCCTC ACTGTTGGAA GCCTCACAAA GACACCGTAT
  GAAGGGGAAG AGTAATTTCT ATGCGCTTTC TTGTCAGGCT GTAAATAAGC GAGCTGAAGC
  TACTGGTGCA TCTGCCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511856	NES08849549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315036					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511856	NES08849549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166118287 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	398 bp proximal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	1367 bp downstream
Tssr764	transcription start site region 764	1869 bp downstream