rs27315038 SNP Detail

Summary

• ID
  rs27315038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166118008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGGG TTTCTCTGTG
  TAGCCCTGAC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTCGACC TAACTCAGAA
  ATCTACCTGT CTCTGCCTCC CAAGTGCTGG GGTTAAAGGT GTGCGCCACC ACTGCCCGGC
  GGCCATTTTT TTGAGAGACA GGGACACCTG TGTCTTTGCA AGCATTCGGT AGGAAAAGCT
  Y
  TATCAAAATG TAAAGCCTCT TAACTTCCTT TGGAGACCTC GGAGAAGGCC TGTTTGCTGC
  AGACTTTCTT CCTGCAGCCA GCCTCCCTTT CTCCCCGGGG GTCTCAGAAG CTTCACCTTA
  AATGGTCTTT AAAGCTCCTC TTTTCTAGCT TTAATTCCCA TGACCCCCAT TGTCCAGTAC
  AAAGTCGAAG GAGCTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37511858	NES08849547	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27315038					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511858	NES08849547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166118008 () rs orientation: forward

Symbol	Name	Function Class
D2Mit24	DNA segment, Chr 2, Massachusetts Institute of Technology 24	677 bp proximal
Gm11468	predicted gene 11468	within coordinates
Gm30733	predicted gene, 30733	1646 bp downstream
Rr570199	regulatory region 570199	1833 bp distal
Tssr764	transcription start site region 764	1590 bp downstream