rs27315100 SNP Detail

Summary

• ID
  rs27315100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166093154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCTGGAA TGGCTGAGTG
  AGCGCAGGTG TGGGGCCTGG TACTGCACAG GCGACTGTCT CCGCAGAACT GTGGTAACTG
  TCCACTTCCT TGCTCTGGAG TTCCTGTCTA CTCATTGACT TAATTCATTT TCGTCCACCC
  TCATGTTTCC CAGATCTCCT CCTTACAGCT GTGGTCGCCC GAGAATGACT GTAGTGACAT
  Y
  ATCTGGGACC TTGCTGAGCC TCCTCAGGAT GACTTATGGC TCTGGTGAGC AGGTGAGACC
  CAGGTTGCTG CCATCCCTGG TTTTCCAGCA GAGAAGCATG GGCTTGGGAG ATGCCTGAGG
  TCACATGGGT GATGGAGGAG ATGCTGGACT TTGACCTGTA CAGATTTCTA GGTTGACATG
  AAAACATCAG ATCCTAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511920	NES08850130	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315100					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511920	NES08850130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166093154 () rs orientation: forward

Symbol	Name	Function Class
Gm75116	predicted gene, 75116	within coordinates
Gm75120	predicted gene, 75120	within coordinates
Rr374223	regulatory region 374223	1003 bp upstream
Rr570187	regulatory region 570187	1369 bp distal
Rr570188	regulatory region 570188	752 bp distal
Rr570189	regulatory region 570189	312 bp distal
Rr570190	regulatory region 570190	212 bp proximal