rs27315107 SNP Detail

Summary

• ID
  rs27315107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166091780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGCAG AGGCTTCTAG
  AACTCCATCC AGTGGTCACA GACTGGATGC TCTTGCTACC CCACAGGTAA TACCTGAGGA
  TTGGTGCCAC TCAAGGAGTA AGCGGAGGCC TGGGCAGGGT TCCAGGGCTC CTGCCTAGCT
  TTCCTTTCTT GGCAACAGCT CCTCTTCTTG TCCTCTGAGG CTCGAAGAAG CTGGATTCTA
  Y
  AAGAGAGATT CTGTCCAGCC CAGGAACCAG AGCCACCTCA TGATGACACA GGGGGTTCTG
  GGTCCAGCTG AGTCTCTAGG TCTTGAGACA CAGAAGGGAT GGGAAGGGCC AACTCCTCTG
  GATCCTTTGT TATAGACAAG TTTAGAAGCC ACTGATGTCA ACCAGAGTCC CAGGAAGCAA
  GACACAGTTT TAAAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511927	NES08850164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315107					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511927	NES08850164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166091780 () rs orientation: forward

Symbol	Name	Function Class
Gm75116	predicted gene, 75116	1326 bp upstream
Gm75120	predicted gene, 75120	668 bp downstream
Rr570187	regulatory region 570187	within coordinates
Rr570188	regulatory region 570188	601 bp proximal
Rr570189	regulatory region 570189	748 bp proximal
Rr570190	regulatory region 570190	1586 bp proximal