rs27315109 SNP Detail

Summary

• ID
  rs27315109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166091467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTTCTC CAAGCCTTTA
  ATTTTCTCAT TTATCATTTG TCAGAGCCCG AGGCCCTTCC TTAGCTCATG GTGTTTGCCA
  GCAGCTAACG ATCCCTTTAC CAAACATCAC AGTCCAGCCA GGAGCTTGTT AACGTTGCTA
  AGGCTGATGA TTTAATGCGT CACTGTCACA GGCAGGTCTC CGGACCCTGA ATCACAGGAA
  Y
  GCTGCAACTG TGGGGCCCTG TGCTTCCTGG AGGCTCCCCC AACACCAGGG AACCATGGAA
  ACCATTCCAG TCCTAGATTT GGAGATAGCT GAGCACTGAG GTTGGCTTTG GAAGCCAGGC
  AGAGGCTTCT AGAACTCCAT CCAGTGGTCA CAGACTGGAT GCTCTTGCTA CCCCACAGGT
  AATACCTGAG GATTGGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511929	NES08850162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315109					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511929	NES08850162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166091467 () rs orientation: forward

Symbol	Name	Function Class
Gm75116	predicted gene, 75116	1639 bp upstream
Gm75120	predicted gene, 75120	981 bp downstream
Rr570187	regulatory region 570187	within coordinates
Rr570188	regulatory region 570188	914 bp proximal
Rr570189	regulatory region 570189	1061 bp proximal
Rr570190	regulatory region 570190	1899 bp proximal