rs27315111 SNP Detail

Summary

• ID
  rs27315111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166091404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCTCCGA GGAAACATCT
  TCTCTCTCCC TGCCGAGGGA CAGACTTACA AAGGATGATA TTTACATTTT CTCCAAGCCT
  TTAATTTTCT CATTTATCAT TTGTCAGAGC CCGAGGCCCT TCCTTAGCTC ATGGTGTTTG
  CCAGCAGCTA ACGATCCCTT TACCAAACAT CACAGTCCAG CCAGGAGCTT GTTAACGTTG
  S
  TAAGGCTGAT GATTTAATGC GTCACTGTCA CAGGCAGGTC TCCGGACCCT GAATCACAGG
  AATGCTGCAA CTGTGGGGCC CTGTGCTTCC TGGAGGCTCC CCCAACACCA GGGAACCATG
  GAAACCATTC CAGTCCTAGA TTTGGAGATA GCTGAGCACT GAGGTTGGCT TTGGAAGCCA
  GGCAGAGGCT TCTAGAACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511931	NES08850160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315111					SNP	C	C	C	C	C	G	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511931	NES08850160	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166091404 () rs orientation: forward

Symbol	Name	Function Class
Gm75116	predicted gene, 75116	1702 bp upstream
Gm75120	predicted gene, 75120	1044 bp downstream
Rr570187	regulatory region 570187	within coordinates
Rr570188	regulatory region 570188	977 bp proximal
Rr570189	regulatory region 570189	1124 bp proximal
Rr570190	regulatory region 570190	1962 bp proximal