rs27315116 SNP Detail

Summary

• ID
  rs27315116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166090813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACACTGA GAGCCTTCCA
  CCATTGCTCT TCCCTTTAAT TTTGAGACAG GGTCTCTCCA GAATCTGTAG CGCCCTGATT
  TGGCTAAGCT GACTGACGGT GAGCCTCAGG GCCCCTCCTG TCTCTGCTTC CCCCGATGGC
  ACGTGCAGCT TTTATGGAGG TGCTGAAATT CCCAACTCAG GTCCTGCTGT TGGTGCGGCC
  R
  TGTCTCCAGA CCCTGTCCTG TTGCATGCAT GGATAAGAAA ATTGCAGGCA GAAGTGTTCT
  CTGGAGAAAG AGTAGAGATG GGATGTGTGG CAAAGCAAGA TTTAGCTTTA TGAGAACAGG
  CAGGGATAAC TGCAGAGCGC GACGATTGTA CAGTATCTCT GCAGTGGGAA CACTTCACGA
  GGGTCAAGGA AGAAGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511936	NES08850155	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315116					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511936	NES08850155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166090813 () rs orientation: forward

Symbol	Name	Function Class
Gm75120	predicted gene, 75120	1635 bp downstream
Rr570186	regulatory region 570186	1815 bp distal
Rr570187	regulatory region 570187	284 bp proximal
Rr570188	regulatory region 570188	1568 bp proximal
Rr570189	regulatory region 570189	1715 bp proximal