rs27315117 SNP Detail

Summary

• ID
  rs27315117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166090461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTCAC AACCCAGATT
  GCTTCCCAGC TTCTCCTACC TTGCCTGCAA AGTCATTCTG GGCGGCAAAG TTACTCTGGG
  AACCCACCCA GTGTTCCACT CCTCCTATTC TGCATCTTCA TCCTCAGGAG CATCCATCCA
  TTTGCATTGG ATGCACTTTG TAGTCACGCT AGGATCTGTC ACTGTCCTTA AACCCTATGT
  Y
  GGTGTCAGAA CTACAGGGTA TATAATGCCT GATTGGTACC CTGCACAGAG TTGGCTGGAA
  TTTGTTCCAG ATAAGTATCA CTGCTTCTCT GTGTGTTGTA CGTGTGAATG TGCACACACA
  CGTGCACGCA CATGTATGTG GAGGCTGGAG GTCAACACTG AGAGCCTTCC ACCATTGCTC
  TTCCCTTTAA TTTTGAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511937	NES08850199	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315117					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511937	NES08850199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166090461 () rs orientation: forward

Symbol	Name	Function Class
Gm75120	predicted gene, 75120	1987 bp downstream
Rr570185	regulatory region 570185	1813 bp distal
Rr570186	regulatory region 570186	1463 bp distal
Rr570187	regulatory region 570187	636 bp proximal
Rr570188	regulatory region 570188	1920 bp proximal