rs27315732 SNP Detail

Summary

• ID
  rs27315732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCACCTAT GGGAGTATTC TCAGAAGCCT GGATCTCCTA
  GACACTGTTT TTCCTTTATC CAGCCATGGA CATGGGCAGC AATCTCTGGG AGTGTAGTAA
  Y
  GACATCAGAG ATGCTCAGGC TAAAAGTCCC CTGGGGCTGT AGAGATGGCT CAGCAATTTA
  GAGGACTAGG TCCCATGTGG TGGTTGACAA CTATGGATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37556656	NES08905968	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	T	C	C	T	C		C	C	C	C		T
ss148023973	ENSMUSSNP2258309	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320569716	CHEV_2_154018656	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27315732					SNP	T	T	C	C	T	C	T	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556656	NES08905968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034840 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567775	regulatory region 567775	1886 bp distal
Rr567776	regulatory region 567776	1844 bp distal
Rr567777	regulatory region 567777	287 bp distal
Rr567778	regulatory region 567778	827 bp proximal
Tssr20976	transcription start site region 20976	1647 bp downstream
Tssr20977	transcription start site region 20977	435 bp upstream