rs27315735 SNP Detail

Summary

• ID
  rs27315735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCA CACACACACA CACACACACA CACACACACA CACACACACA CACCTCACAC
  ACACCTGGAT TTCTAAAGAA ACAGAAATTC CAGAGAGATG CTGGGGGTGA CCTCCTAGGA
  CCACAGTGAA GTCTCAGGCT GCAGCTCAGC CACCTCCCTG GGCCTTCCCT GGGCTGCTGG
  Y
  GAGTCCTGCA CTGGAGCAGA GTGGAAGAAG CCACCCTGAG AGGCTATCTC TGCCACAGCC
  AAGCAGGGGG AGATGAGGCT AACCGCAGAG CACTTCTCAA TTTGAGACAC TCATCTGCTC
  AGAAGCACCC TCATTTCAGA GATCCCCTTG GCCCCTAACA CACACAGACG CACCTATGGG
  AGTATTCTCA GAAGCCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37556659	NES08905964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315735					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556659	NES08905964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034572 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1824 bp distal
Rr567775	regulatory region 567775	1618 bp distal
Rr567776	regulatory region 567776	1576 bp distal
Rr567777	regulatory region 567777	19 bp distal
Rr567778	regulatory region 567778	1095 bp proximal
Tssr20971	transcription start site region 20971	1893 bp downstream
Tssr20972	transcription start site region 20972	1884 bp downstream
Tssr20973	transcription start site region 20973	1870 bp downstream
Tssr20974	transcription start site region 20974	1820 bp downstream
Tssr20975	transcription start site region 20975	1795 bp downstream
Tssr20976	transcription start site region 20976	1379 bp downstream
Tssr20977	transcription start site region 20977	703 bp upstream